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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G12670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 519aa MW: 56328.2 Da PI: 7.6693 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.2 | 8e-14 | 81 | 118 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C N OPUNC06G12670.1 81 RKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNYV 118 689*************************.*******975 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 165 | 204 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC+dCkN e OPUNC06G12670.1 165 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 204 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.7E-13 | 80 | 120 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.404 | 81 | 205 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-10 | 82 | 117 | IPR005172 | CRC domain |
SMART | SM01114 | 1.5E-18 | 165 | 206 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 168 | 203 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MEKKEMQQQP QPESEPEPAA PARPPAPAAA AEAKATPPPP QPQPKPAAPV HPLMPTPRPW 60 PVAFIPPKPV AEIKSAPSTK RKKHCNCKNS QCLKLYCECF AAGLYCDGCH CKQCGNYVGN 120 ESARQEAINS TKQRNPKAFQ PKIENCSTAL NPRKDDAGAP ASLPKHNKGC HCKKSGCLKK 180 YCECFQANIL CSKNCKCQDC KNFEGSEELR LITQGDNSSD RNNIQHAANV ALNGAIGSSG 240 YRYSPVRRKR PTEDPRCQKL NGEGSMMQSQ FQEANHVDSS EITSSTGLEG CYSNYQGRSN 300 VVYRSTLANT ISPTDATGLA KHLVIVCRKA ADAFLTTAEN KMEMEVERGI HTNSDSATNM 360 DQQNGGDFGP CCNSLEDSRP ASPGTQALMC DEQGSTFGTD YRISFPVALH DQDTSELNAQ 420 QEKAVLTGFR DYLRTVITRG KINALTFFVS LIFNGCSTGI TEANRSSEAA MQLDTRKRDE 480 STTILPPLNA VEKEKLEVPD GPESPKASPS ASNCGDQAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836256 | 0.0 | CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641295.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 7 | ||||
TrEMBL | A0A0E0LB86 | 0.0 | A0A0E0LB86_ORYPU; Uncharacterized protein | ||||
STRING | LOC_Os06g22670.1 | 0.0 | (Oryza sativa Japonica Group) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5755 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.2 | 7e-85 | Tesmin/TSO1-like CXC domain-containing protein |