PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G12670.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 519aa MW: 56328.2 Da PI: 7.6693

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G12670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.2	8e-14	81	118	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C N OPUNC06G12670.1 81 RKKHCNCKNSQCLKLYCECFAAGLYCDG-CHCKQCGNYV 118 689***********************.*****975 PP
2	TCR	50.9	3.1e-16	165	204	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC+dCkN e OPUNC06G12670.1 165 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCQDCKNFE 204 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.7E-13	80	120	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.404	81	205	IPR005172	CRC domain
Pfam	PF03638	1.3E-10	82	117	IPR005172	CRC domain
SMART	SM01114	1.5E-18	165	206	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	168	203	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MEKKEMQQQP QPESEPEPAA PARPPAPAAA AEAKATPPPP QPQPKPAAPV HPLMPTPRPW 60 PVAFIPPKPV AEIKSAPSTK RKKHCNCKNS QCLKLYCECF AAGLYCDGCH CKQCGNYVGN 120 ESARQEAINS TKQRNPKAFQ PKIENCSTAL NPRKDDAGAP ASLPKHNKGC HCKKSGCLKK 180 YCECFQANIL CSKNCKCQDC KNFEGSEELR LITQGDNSSD RNNIQHAANV ALNGAIGSSG 240 YRYSPVRRKR PTEDPRCQKL NGEGSMMQSQ FQEANHVDSS EITSSTGLEG CYSNYQGRSN 300 VVYRSTLANT ISPTDATGLA KHLVIVCRKA ADAFLTTAEN KMEMEVERGI HTNSDSATNM 360 DQQNGGDFGP CCNSLEDSRP ASPGTQALMC DEQGSTFGTD YRISFPVALH DQDTSELNAQ 420 QEKAVLTGFR DYLRTVITRG KINALTFFVS LIFNGCSTGI TEANRSSEAA MQLDTRKRDE 480 STTILPPLNA VEKEKLEVPD GPESPKASPS ASNCGDQAS

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MEKKEMQQQP QPESEPEPAA PARPPAPAAA AEAKATPPPP QPQPKPAAPV HPLMPTPRPW  60
PVAFIPPKPV AEIKSAPSTK RKKHCNCKNS QCLKLYCECF AAGLYCDGCH CKQCGNYVGN  120
ESARQEAINS TKQRNPKAFQ PKIENCSTAL NPRKDDAGAP ASLPKHNKGC HCKKSGCLKK  180
YCECFQANIL CSKNCKCQDC KNFEGSEELR LITQGDNSSD RNNIQHAANV ALNGAIGSSG  240
YRYSPVRRKR PTEDPRCQKL NGEGSMMQSQ FQEANHVDSS EITSSTGLEG CYSNYQGRSN  300
VVYRSTLANT ISPTDATGLA KHLVIVCRKA ADAFLTTAEN KMEMEVERGI HTNSDSATNM  360
DQQNGGDFGP CCNSLEDSRP ASPGTQALMC DEQGSTFGTD YRISFPVALH DQDTSELNAQ  420
QEKAVLTGFR DYLRTVITRG KINALTFFVS LIFNGCSTGI TEANRSSEAA MQLDTRKRDE  480
STTILPPLNA VEKEKLEVPD GPESPKASPS ASNCGDQAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT836256	0.0	CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641295.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 7
TrEMBL	A0A0E0LB86	0.0	A0A0E0LB86_ORYPU; Uncharacterized protein
STRING	LOC_Os06g22670.1	0.0	(Oryza sativa Japonica Group)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5755	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.2	7e-85	Tesmin/TSO1-like CXC domain-containing protein